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    Other than the lineprof tool and the Rcpp comment, most of this applies directly to MATLAB code as well. I had the unfortunate pleasure of dealing with roughly 15k lines worth of MATLAB simulator code for a class I took in undergrad (no choice as to the language we used). Only tweak: Instead of lapply -> mclapply, switch for -> parfor. MATLAB complains about dependency stuff (which was nice to not have to reason about separately) but it provides decent error messages about what looks dependent.